1SYY image
Deposition Date 2004-04-02
Release Date 2004-07-13
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1SYY
Title:
Crystal structure of the R2 subunit of ribonucleotide reductase from Chlamydia trachomatis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribonucleoside-diphosphate reductase beta chain
Gene (Uniprot):nrdB
Chain IDs:A
Chain Length:346
Number of Molecules:1
Biological Source:Chlamydia trachomatis
Primary Citation
The radical site in chlamydial ribonucleotide reductase defines a new R2 subclass.
Science 305 245 248 (2004)
PMID: 15247479 DOI: 10.1126/science.1098419

Abstact

Ribonucleotide reductase (RNR) synthesizes the deoxyribonucleotides for DNA synthesis. The R2 protein of normal class I ribonucleotide reductases contains a diiron site that produces a stable tyrosyl free radical, essential for enzymatic activity. Structural and electron paramagnetic resonance studies of R2 from Chlamydia trachomatis reveal a protein lacking a tyrosyl radical site. Instead, the protein yields an iron-coupled radical upon reconstitution. The coordinating structure of the diiron site is similar to that of diiron oxidases/monoxygenases and supports a role for this radical in the RNR mechanism. The specific ligand pattern in the C. trachomatis R2 metal site characterizes a new group of R2 proteins that so far has been found in eight organisms, three of which are human pathogens.

Legend

Protein

Chemical

Disease

Primary Citation of related structures