1SYX image
Entry Detail
PDB ID:
1SYX
Title:
The crystal structure of a binary U5 snRNP complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2004-04-02
Release Date:
2005-10-18
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spliceosomal U5 snRNP-specific 15 kDa protein
Chain IDs:A, B (auth: C), C (auth: E)
Chain Length:142
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CD2 antigen cytoplasmic tail-binding protein 2
Chain IDs:D (auth: B), E (auth: D), F
Chain Length:86
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Structural basis for the bifunctionality of the U5 snRNP 52K protein (CD2BP2).
J.Mol.Biol. 369 902 908 (2007)
PMID: 17467737 DOI: 10.1016/j.jmb.2007.03.077

Abstact

The bifunctional protein U5-52K is associated with the spliceosomal 20 S U5 snRNP, and it also plays a role in immune response as CD2 receptor binding protein 2 (CD2BP2). U5-52K binds to the CD2 receptor via its GYF-domain specifically recognizing a proline-rich motif on the cytoplasmic surface of the receptor. The GYF-domain is also mediating the interaction of the proteins U5-52K and U5-15K within the spliceosomal U5 snRNP. Here we report the crystal structure of the complex of GYF-domain and U5-15K protein revealing the structural basis for the bifunctionality of the U5-52K protein. The complex structure unveils novel interaction sites on both proteins, as neither the polyproline-binding site of the GYF-domain nor the common ligand-binding cleft of thioredoxin-like proteins, to which U5-15K belongs, are involved in the interaction of U5-15K and U5-52K.

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Primary Citation of related structures