1SQ2 image
Deposition Date 2004-03-17
Release Date 2004-08-24
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1SQ2
Title:
Crystal Structure Analysis of the Nurse Shark New Antigen Receptor (NAR) Variable Domain in Complex With Lysozyme
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysozyme C
Gene (Uniprot):LYZ
Chain IDs:A (auth: L)
Chain Length:129
Number of Molecules:1
Biological Source:Gallus gallus
Polymer Type:polypeptide(L)
Molecule:novel antigen receptor
Chain IDs:B (auth: N)
Chain Length:113
Number of Molecules:1
Biological Source:Ginglymostoma cirratum
Primary Citation
Crystal structure of a shark single-domain antibody V region in complex with lysozyme.
Science 305 1770 1773 (2004)
PMID: 15319492 DOI: 10.1126/science.1101148

Abstact

Cartilaginous fish are the phylogenetically oldest living organisms known to possess components of the vertebrate adaptive immune system. Key to their immune response are heavy-chain, homodimeric immunoglobulins called new antigen receptors (IgNARs), in which the variable (V) domains recognize antigens with only a single immunoglobulin domain, akin to camelid heavy-chain V domains. The 1.45 angstrom resolution crystal structure of the type I IgNAR V domain in complex with hen egg-white lysozyme (HEL) reveals a minimal antigen-binding domain that contains only two of the three conventional complementarity-determining regions but still binds HEL with nanomolar affinity by means of a binding interface comparable in size to conventional antibodies.

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Primary Citation of related structures