1SL3 image
Deposition Date 2004-03-05
Release Date 2004-08-03
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1SL3
Title:
crystal structue of Thrombin in complex with a potent P1 heterocycle-Aryl based inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Hirudo medicinalis (Taxon ID: 6421)
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:thrombin
Gene (Uniprot):F2
Chain IDs:A
Chain Length:287
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Hirudin
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:Hirudo medicinalis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS B TYR O-SULFO-L-TYROSINE
Ligand Molecules
Primary Citation

Abstact

In an effort to discover potent, clinically useful thrombin inhibitors, a rapid analogue synthetic approach was used to explore the P(1) region. Various benzylamines were coupled to a pyridine/pyrazinone P(2)-P(3) template. One compound with an o-thiadiazole benzylic substitution was found to have a thrombin K(i) of 0.84 nM. A study of ortho-substituted five-membered-ring heterocycles was undertaken and subsequently demonstrated that the o-triazole and tetrazole rings were optimal. Combination of these potent P(1) aryl heterocycles with a variety of P(2)-P(3) groups produced a compound with an extraordinary thrombin inhibitory activity of 1.4 pM. It is hoped that this potency enhancement in P(1) will allow for more diversification in the P(2)-P(3) region to ultimately address additional pharmacological concerns.

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Primary Citation of related structures