1SKJ image
Deposition Date 1997-09-18
Release Date 1998-02-25
Last Version Date 2024-05-22
Entry Detail
PDB ID:
1SKJ
Title:
COCRYSTAL STRUCTURE OF UREA-SUBSTITUTED PHOSPHOPEPTIDE COMPLEX
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PP60 V-SRC TYROSINE KINASE TRANSFORMING PROTEIN
Gene (Uniprot):V-SRC
Mutagens:N-TERMINAL INS(GS) AND C-TERMINAL INS(EFIVTD)
Chain IDs:A
Chain Length:113
Number of Molecules:1
Biological Source:Rous sarcoma virus
Ligand Molecules
Primary Citation
Design, synthesis, and cocrystal structure of a nonpeptide Src SH2 domain ligand.
J.Med.Chem. 40 3719 3725 (1997)
PMID: 9371236 DOI: 10.1021/jm970402q

Abstact

The specific association of an SH2 domain with a phosphotyrosine (pTyr)-containing sequence of another protein precipitates a cascade of intracellular molecular interactions (signals) which effect a wide range of intracellular processes. The nonreceptor tyrosine kinase Src, which has been associated with breast cancer and osteoporosis, contains an SH2 domain. Inhibition of Src SH2-phosphoprotein interactions by small molecules will aid biological proof-of-concept studies which may lead to the development of novel therapeutic agents. Structure-based design efforts have focused on reducing the size and charge of Src SH2 ligands while increasing their ability to penetrate cells and reach the intracellular Src SH2 domain target. In this report we describe the synthesis, binding affinity, and Src SH2 cocrystal structure of a small, novel, nonpeptide, urea-containing SH2 domain ligand.

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Primary Citation of related structures