1SJM image
Deposition Date 2004-03-03
Release Date 2004-06-22
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1SJM
Keywords:
Title:
Nitrite bound copper containing nitrite reductase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.13
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Copper-containing nitrite reductase
Gene (Uniprot):nirK
Chain IDs:A, B, C
Chain Length:341
Number of Molecules:3
Biological Source:Alcaligenes faecalis
Primary Citation
Side-on copper-nitrosyl coordination by nitrite reductase.
Science 304 867 870 (2004)
PMID: 15131305 DOI: 10.1126/science.1095109

Abstact

A copper-nitrosyl intermediate forms during the catalytic cycle of nitrite reductase, the enzyme that mediates the committed step in bacterial denitrification. The crystal structure of a type 2 copper-nitrosyl complex of nitrite reductase reveals an unprecedented side-on binding mode in which the nitrogen and oxygen atoms are nearly equidistant from the copper cofactor. Comparison of this structure with a refined nitrite-bound crystal structure explains how coordination can change between copper-oxygen and copper-nitrogen during catalysis. The side-on copper-nitrosyl in nitrite reductase expands the possibilities for nitric oxide interactions in copper proteins such as superoxide dismutase and prions.

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Primary Citation of related structures