1SGL image
Deposition Date 2004-02-24
Release Date 2004-06-22
Last Version Date 2024-11-13
Entry Detail
PDB ID:
1SGL
Keywords:
Title:
The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:trichomaglin
Chain IDs:A
Chain Length:209
Number of Molecules:1
Biological Source:Trichosanthes lepiniana
Ligand Molecules
Primary Citation
The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease.
Structure 12 1015 1025 (2004)
PMID: 15274921 DOI: 10.1016/j.str.2004.03.023

Abstact

Trichomaglin is a protein isolated from root tuber of the plant Maganlin (Trichosanthes Lepiniate, Cucurbitaceae). The crystal structure of trichomaglin has been determined by multiple-isomorphous replacement and refined at 2.2 A resolution. The X-ray sequence was established, based on electron density combined with the experimentally determined N-terminal sequence, and the sequence information derived from mass spectroscopic analysis. X-ray sequence-based homolog search and the three-dimensional structure reveal that trichomaglin is a novel S-like RNase, which was confirmed by biological assay. Trichomaglin molecule contains an additional beta sheet in the HV(b) region, compared with the known plant RNase structures. Fourteen cystein residues form seven disulfide bridges, more than those in the other known structures of S- and S-like RNases. His43 and His105 are expected to be the catalytic acid and base, respectively. Four hydrosulfate ions are bound in the active site pocket, three of them mimicking the substrate binding sites.

Legend

Protein

Chemical

Disease

Primary Citation of related structures