1SEB image
Deposition Date 1995-11-26
Release Date 1996-06-20
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1SEB
Title:
COMPLEX OF THE HUMAN MHC CLASS II GLYCOPROTEIN HLA-DR1 AND THE BACTERIAL SUPERANTIGEN SEB
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.32
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN
Gene (Uniprot):HLA-DRA
Chain IDs:A, E
Chain Length:181
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN
Chain IDs:B, F
Chain Length:192
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ENDOGENOUS PEPTIDE MODEL, POLY-ALA
Chain IDs:C, G
Chain Length:13
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ENTEROTOXIN TYPE B
Gene (Uniprot):entB
Chain IDs:D, H
Chain Length:234
Number of Molecules:2
Biological Source:Staphylococcus aureus
Ligand Molecules
Primary Citation
Three-dimensional structure of a human class II histocompatibility molecule complexed with superantigen.
Nature 368 711 718 (1994)
PMID: 8152483 DOI: 10.1038/368711a0

Abstact

The structure of a bacterial superantigen, Staphylococcus aureus enterotoxin B, bound to a human class II histocompatibility complex molecule (HLA-DR1) has been determined by X-ray crystallography. The superantigen binds as an intact protein outside the conventional peptide antigen-binding site of the class II major histocompatibility complex (MHC) molecule. No large conformational changes occur upon complex formation in either the DR1 or the enterotoxin B molecules. The structure of the complex helps explain how different class II molecules and superantigens associate and suggests a model for ternary complex formation with the T-cell antigen receptor (TCR), in which unconventional TCR-MHC contacts are possible.

Legend

Protein

Chemical

Disease

Primary Citation of related structures