1S69 image
Deposition Date 2004-01-22
Release Date 2004-09-21
Last Version Date 2024-11-13
Entry Detail
PDB ID:
1S69
Title:
The X-ray structure of the cyanobacteria Synechocystis hemoglobin "cyanoglobin" with cyanide ligand
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.19
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 41
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyanoglobin
Gene (Uniprot):glbN
Chain IDs:A
Chain Length:124
Number of Molecules:1
Biological Source:Synechocystis sp.
Primary Citation
Crystallographic analysis of synechocystis cyanoglobin reveals the structural changes accompanying ligand binding in a hexacoordinate hemoglobin.
J.Mol.Biol. 341 1097 1108 (2004)
PMID: 15289104 DOI: 10.1016/j.jmb.2004.05.070

Abstact

The crystal structures of cyanide and azide-bound forms of the truncated hemoglobin from Synechocystis are presented at 1.8 angstroms resolution. A comparison with the structure of the endogenously liganded protein reveals a conformational shift unprecedented in hemoglobins, and provides the first picture of a hexacoordinate hemoglobin in both the bis-histidyl and the exogenously coordinated states. The structural changes between the different conformations are confined to two regions of the protein; the B helix, and the E helix, including the EF loop. A molecular "hinge" controlling movement of the E helix is observed in the EF loop, which is composed of three principal structural elements: Arg64, the heme-d-propionate, and a three-residue extension of the F helix. Additional features of the structural transition between the two protein conformations are discussed as they relate to the complex ligand-binding behavior observed in hexacoordinate hemoglobins, and the potential physiological function of this class of proteins.

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