1S58 image
Deposition Date 2004-01-20
Release Date 2004-08-17
Last Version Date 2024-04-03
Entry Detail
PDB ID:
1S58
Keywords:
Title:
The structure of B19 parvovirus capsid
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.31
R-Value Work:
0.31
R-Value Observed:
0.31
Space Group:
P 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:B19 parvovirus capsid
Chain IDs:A
Chain Length:554
Number of Molecules:1
Biological Source:Human parvovirus B19
Ligand Molecules
Primary Citation
The structure of human parvovirus B19.
Proc.Natl.Acad.Sci.USA 101 11628 11633 (2004)
PMID: 15289612 DOI: 10.1073/pnas.0402992101

Abstact

Human parvovirus B19 is the only parvovirus known to be a human pathogen. The structure of recombinant B19-like particles has been determined to approximately 3.5-A resolution by x-ray crystallography and, to our knowledge, represents the first near-atomic structure of an Erythrovirus. The polypeptide fold of the major capsid protein VP2 is a "jelly roll" with a beta-barrel motif similar to that found in many icosahedral viruses. The large loops connecting the strands of the beta-barrel form surface features that differentiate B19 from other parvoviruses. Although B19 VP2 has only 26% sequence identity to VP3 of adeno-associated virus, 72% of the C(alpha) atoms can be aligned structurally with a rms deviation of 1.8 A. Both viruses require an integrin as a coreceptor, and conserved surface features suggest a common receptor-binding region.

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