1S1D image
Entry Detail
PDB ID:
1S1D
Keywords:
Title:
Structure and protein design of human apyrase
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2004-01-06
Release Date:
2004-03-16
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:apyrase
Chain IDs:A, B
Chain Length:331
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.) 116 649 659 (2004)
PMID: 15006348 DOI: 10.1016/S0092-8674(04)00172-2

Abstact

Hematophagous arthropods secrete a salivary apyrase that inhibits platelet activation by catabolizing ADP released from damaged tissues and blood cells. We report the X-ray crystal structures of a human enzyme of the soluble apyrase family in its apo state and bound to a substrate analog. The structures reveal a nucleotide binding domain comprising a five-blade beta propeller, binding determinants of the substrate and the active site, and an unusual calcium binding site with a potential regulatory function. Using a comparative structural biology approach, we were able to redesign the human apyrase so as to enhance its ADPase activity by more than 100-fold. The engineered enzyme is a potent inhibitor of platelet aggregation and may serve as the basis for the development of a new class of antithrombotic agents.

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