1S18 image
Deposition Date 2004-01-05
Release Date 2004-03-16
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1S18
Keywords:
Title:
Structure and protein design of human apyrase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:apyrase
Gene (Uniprot):CANT1
Chain IDs:A, B
Chain Length:331
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.) 116 649 659 (2004)
PMID: 15006348 DOI: 10.1016/S0092-8674(04)00172-2

Abstact

Hematophagous arthropods secrete a salivary apyrase that inhibits platelet activation by catabolizing ADP released from damaged tissues and blood cells. We report the X-ray crystal structures of a human enzyme of the soluble apyrase family in its apo state and bound to a substrate analog. The structures reveal a nucleotide binding domain comprising a five-blade beta propeller, binding determinants of the substrate and the active site, and an unusual calcium binding site with a potential regulatory function. Using a comparative structural biology approach, we were able to redesign the human apyrase so as to enhance its ADPase activity by more than 100-fold. The engineered enzyme is a potent inhibitor of platelet aggregation and may serve as the basis for the development of a new class of antithrombotic agents.

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