1RZ6 image
Deposition Date 2003-12-24
Release Date 2004-06-29
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1RZ6
Keywords:
Title:
Di-haem Cytochrome c Peroxidase, Form IN
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome c peroxidase
Chain IDs:A
Chain Length:326
Number of Molecules:1
Biological Source:Marinobacter hydrocarbonoclasticus
Primary Citation
Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617.
Structure 12 961 973 (2004)
PMID: 15274917 DOI: 10.1016/j.str.2004.03.025

Abstact

Cytochrome c peroxidase (CCP) catalyses the reduction of H(2)O(2) to H(2)O, an important step in the cellular detoxification process. The crystal structure of the di-heme CCP from Pseudomonas nautica 617 was obtained in two different conformations in a redox state with the electron transfer heme reduced. Form IN, obtained at pH 4.0, does not contain Ca(2+) and was refined at 2.2 A resolution. This inactive form presents a closed conformation where the peroxidatic heme adopts a six-ligand coordination, hindering the peroxidatic reaction from taking place. Form OUT is Ca(2+) dependent and was crystallized at pH 5.3 and refined at 2.4 A resolution. This active form shows an open conformation, with release of the distal histidine (His71) ligand, providing peroxide access to the active site. This is the first time that the active and inactive states are reported for a di-heme peroxidase.

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