1RVF image
Entry Detail
PDB ID:
1RVF
Title:
FAB COMPLEXED WITH INTACT HUMAN RHINOVIRUS
Biological Source:
PDB Version:
Deposition Date:
1996-09-05
Release Date:
1998-02-25
Method Details:
Experimental Method:
Resolution:
4.00 Å
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
R 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HUMAN RHINOVIRUS 14 COAT PROTEIN
Chain IDs:A (auth: 1)
Chain Length:289
Number of Molecules:1
Biological Source:Human rhinovirus 14
Polymer Type:polypeptide(L)
Description:HUMAN RHINOVIRUS 14 COAT PROTEIN
Chain IDs:B (auth: 2)
Chain Length:262
Number of Molecules:1
Biological Source:Human rhinovirus 14
Polymer Type:polypeptide(L)
Description:HUMAN RHINOVIRUS 14 COAT PROTEIN
Chain IDs:C (auth: 3)
Chain Length:236
Number of Molecules:1
Biological Source:Human rhinovirus 14
Polymer Type:polypeptide(L)
Description:HUMAN RHINOVIRUS 14 COAT PROTEIN
Chain IDs:D (auth: 4)
Chain Length:68
Number of Molecules:1
Biological Source:Human rhinovirus sp.
Polymer Type:polypeptide(L)
Description:FAB 17-IA
Chain IDs:F (auth: H)
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:FAB 17-IA
Chain IDs:E (auth: L)
Chain Length:110
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation

Abstact

The three-dimensional structure of intact human rhinovirus 14 (HRV-14) complexed with Fab fragments (Fab17-IA) from a strongly neutralizing antibody that binds bivalently to the virion has been determined to 4.0 angstrom resolution by a combination of X-ray crystallography and cryo-electron microscopy. In contradiction to the most commonly held model of antibody-mediated neutralization, Fab17-IA does not induce a conformational change in the HRV-14 capsid. Instead, the paratope of the antibody undergoes a large conformational change to accommodate the epitope. Unlike any previously described antibody-antigen structure, the conserved framework region of the antibody makes extensive contact with the viral surface. Fab17-IA penetrates deep within the canyon in which the cellular receptor for HRV-14 binds. Hence, it is unlikely that viral quaternary structure evolves merely to evade immune recognition. Instead, the shape and position of the receptor-binding region on a virus probably dictates receptor binding and subsequent uncoating events and has little or no influence on concealing the virus from the immune system.

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Primary Citation of related structures