1RQR image
Deposition Date 2003-12-07
Release Date 2004-03-02
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1RQR
Keywords:
Title:
Crystal structure and mechanism of a bacterial fluorinating enzyme, product complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:5'-fluoro-5'-deoxyadenosine synthase
Gene (Uniprot):flA
Chain IDs:A, B, C
Chain Length:299
Number of Molecules:3
Biological Source:Streptomyces cattleya
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Crystal structure and mechanism of a bacterial fluorinating enzyme
Nature 427 561 565 (2004)
PMID: 14765200 DOI: 10.1038/nature02280

Abstact

Fluorine is the thirteenth most abundant element in the earth's crust, but fluoride concentrations in surface water are low and fluorinated metabolites are extremely rare. The fluoride ion is a potent nucleophile in its desolvated state, but is tightly hydrated in water and effectively inert. Low availability and a lack of chemical reactivity have largely excluded fluoride from biochemistry: in particular, fluorine's high redox potential precludes the haloperoxidase-type mechanism used in the metabolic incorporation of chloride and bromide ions. But fluorinated chemicals are growing in industrial importance, with applications in pharmaceuticals, agrochemicals and materials products. Reactive fluorination reagents requiring specialist process technologies are needed in industry and, although biological catalysts for these processes are highly sought after, only one enzyme that can convert fluoride to organic fluorine has been described. Streptomyces cattleya can form carbon-fluorine bonds and must therefore have evolved an enzyme able to overcome the chemical challenges of using aqueous fluoride. Here we report the sequence and three-dimensional structure of the first native fluorination enzyme, 5'-fluoro-5'-deoxyadenosine synthase, from this organism. Both substrate and products have been observed bound to the enzyme, enabling us to propose a nucleophilic substitution mechanism for this biological fluorination reaction.

Legend

Protein

Chemical

Disease

Primary Citation of related structures