1ROV image
Deposition Date 2003-12-02
Release Date 2004-03-16
Last Version Date 2025-03-26
Entry Detail
PDB ID:
1ROV
Keywords:
Title:
Lipoxygenase-3 Treated with Cumene Hydroperoxide
Biological Source:
Source Organism:
Glycine max (Taxon ID: 3847)
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Seed lipoxygenase-3
Gene (Uniprot):LOX1.3
Chain IDs:A
Chain Length:857
Number of Molecules:1
Biological Source:Glycine max
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HLU A LEU BETA-HYDROXYLEUCINE
HTR A TRP BETA-HYDROXYTRYPTOPHANE
Ligand Molecules
Primary Citation
Interaction between non-heme iron of lipoxygenases and cumene hydroperoxide: basis for enzyme activation, inactivation, and inhibition
J.Am.Chem.Soc. 126 2006 2015 (2004)
PMID: 14971933 DOI: 10.1021/ja0390855

Abstact

Lipoxygenase catalysis depends in a critical fashion on the redox properties of a unique mononuclear non-heme iron cofactor. The isolated enzyme contains predominantly, if not exclusively, iron(II), but the catalytically active form of the enzyme has iron(III). The activating oxidation of the iron takes place in a reaction with the hydroperoxide product of the catalyzed reaction. In a second peroxide-dependent process, lipoxygenases are also inactivated. To examine the redox activation/inactivation dichotomy in lipoxygenase chemistry, the interaction between lipoxygenase-1 (and -3) and cumene hydroperoxide was investigated. Cumene hydroperoxide was a reversible inhibitor of the reaction catalyzed by lipoxygenase-1 under standard assay conditions at high substrate concentrations. Reconciliation of the data with the currently held kinetic mechanism requires simultaneous binding of substrate and peroxide. The enzyme also was both oxidized and largely inactivated in a reaction with the peroxide in the absence of substrate. The consequences of this reaction for the enzyme included the hydroxylation at C beta of two amino acid side chains in the vicinity of the cofactor, Trp and Leu. The modifications were identified by mass spectrometry and X-ray crystallography. The peroxide-induced oxidation of iron was also accompanied by a subtle rearrangement in the coordination sphere of the non-heme iron atom. Since the enzyme retains catalytic activity, albeit diminished, after treatment with cumene hydroperoxide, the structure of the iron site may reflect the catalytically relevant form of the cofactor.

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Primary Citation of related structures