1RGB image
Deposition Date 2003-11-12
Release Date 2005-01-18
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1RGB
Keywords:
Title:
Phospholipase A2 from Vipera ammodytes meridionalis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phospholipase A2
Chain IDs:A, B, C (auth: K), D (auth: L)
Chain Length:122
Number of Molecules:4
Biological Source:Vipera ammodytes meridionalis
Ligand Molecules
Primary Citation
Asp49 phospholipase A(2)-elaidoylamide complex: a new mode of inhibition.
Biochem.Biophys.Res.Commun. 319 1314 1321 (2004)
PMID: 15194511 DOI: 10.1016/j.bbrc.2004.05.106

Abstact

The inhibition of phospholipase A(2)s (PLA(2)s) is of pharmacological and therapeutic interest because these enzymes are involved in several inflammatory diseases. Elaidoylamide is a powerful inhibitor of a neurotoxic PLA(2) from the Vipera ammodytes meridionalis venom. The X-ray structure of the enzyme-inhibitor complex reveals a new mode of Asp49 PLA(2) inhibition by a fatty acid hydrocarbon chain. The structure contains two identical homodimers in the asymmetric unit. In each dimer one subunit is rotated by 180 degrees with respect to the other and the two molecules are oriented head-to-tail. One molecule of elaidoylamide is bound simultaneously to the substrate binding sites of two associated neurotoxic phospholipase A(2) molecules. The inhibitor binds symmetrically to the hydrophobic channels of the two monomers. The structure can be used to design anti-inflammatory drugs.

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Primary Citation of related structures