1RF3 image
Deposition Date 2003-11-07
Release Date 2004-07-06
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1RF3
Title:
Structurally Distinct Recognition Motifs in Lymphotoxin-B Receptor and CD40 for TRAF-mediated Signaling
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.31
R-Value Work:
0.26
Space Group:
P 3 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TNF receptor associated factor 3
Gene (Uniprot):TRAF3
Chain IDs:A
Chain Length:200
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:24-residue peptide from Lymphotoxin-B Receptor
Gene (Uniprot):LTBR
Chain IDs:B
Chain Length:24
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Structurally distinct recognition motifs in lymphotoxin-beta receptor and CD40 for tumor necrosis factor receptor-associated factor (TRAF)-mediated signaling.
J.Biol.Chem. 278 50523 50529 (2003)
PMID: 14517219 DOI: 10.1074/jbc.M309381200

Abstact

Lymphotoxin-beta receptor (LTbetaR) and CD40 are members of the tumor necrosis factor family of signaling receptors that regulate cell survival or death through activation of NF-kappaB. These receptors transmit signals through downstream adaptor proteins called tumor necrosis factor receptor-associated factors (TRAFs). In this study, the crystal structure of a region of the cytoplasmic domain of LTbetaR bound to TRAF3 has revealed an unexpected new recognition motif, 388IPEEGD393, for TRAF3 binding. Although this motif is distinct in sequence and structure from the PVQET motif in CD40 and PIQCT in the regulator TRAF-associated NF-kappaB activator (TANK), recognition is mediated in the same binding crevice on the surface of TRAF3. The results reveal structurally adaptive "hot spots" in the TRAF3-binding crevice that promote molecular interactions driving specific signaling after contact with LTbetaR, CD40, or the downstream regulator TANK.

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Primary Citation of related structures