1RB7 image
Deposition Date 2003-11-02
Release Date 2004-03-02
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1RB7
Keywords:
Title:
Yeast cytosine deaminase crystal form p212121 with sodium acetate.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytosine deaminase
Gene (Uniprot):FCY1
Chain IDs:A, B
Chain Length:161
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Microseed matrix screening to improve crystals of yeast cytosine deaminase.
Acta Crystallogr.,Sect.D 60 601 605 (2004)
PMID: 14993707 DOI: 10.1107/S0907444903029664

Abstact

A crystallization strategy termed 'microseed matrix screening' is described where the optimal conditions for nucleation versus extended lattice growth are not compatible. This method is an extension of conventional seeding techniques in which microseeds from the nucleation step are systematically seeded into new conditions where all components of the drop are allowed to vary to screen for subsequent growth of well ordered specimens. The structure of a crystal form of yeast cytosine deaminase produced by streak-seeding using a single condition for both nucleation and growth is compared with the structure of a related crystal form produced by separating nucleation and growth conditions. The resulting structural comparison demonstrates that differential chelation patterns of cations by acidic surface residues of proteins within crystal lattice contacts is a critical parameter of crystal nucleation and growth.

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Primary Citation of related structures