1R9U image
Deposition Date 2003-10-31
Release Date 2004-11-09
Last Version Date 2025-03-26
Entry Detail
PDB ID:
1R9U
Keywords:
Title:
Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
24
Selection Criteria:
STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS, STRUCTURES WITH THE LOWEST ENERGY,TARGET FUNCTION
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ZERVAMICIN IIB
Chain IDs:A
Chain Length:17
Number of Molecules:1
Biological Source:EMERICELLOPSIS SALMOSYNNEMATA
Ligand Molecules
Peptide-like Molecules
PRD_000159
Primary Citation
Biosynthetic Uniform 13C,15N-Labelling of Zervamicin Iib. Complete 13C and 15N NMR Assignment.
J.Pept.Sci. 9 817 826 (2003)
PMID: 14658801 DOI: 10.1002/PSC.499

Abstact

Zervamicin IIB is a member of the alpha-aminoisobutyric acid containing peptaibol antibiotics. A new procedure for the biosynthetic preparation of the uniformly 13C- and 15N-enriched peptaibol is described This compound was isolated from the biomass of the fungus-producer Emericellopsis salmosynnemata strain 336 IMI 58330 obtained upon cultivation in the totally 13C, 15N-labelled complete medium. To prepare such a medium the autolysed biomass and the exopolysaccharides of the obligate methylotrophic bacterium Methylobacillus flagellatus KT were used. This microorganism was grown in totally 13C, 15N-labelled minimal medium containing 13C-methanol and 15N-ammonium chloride as the only carbon and nitrogen sources. Preliminary NMR spectroscopic analysis indicated a high extent of isotope incorporation (> 90%) and led to the complete 13C- and 15N-NMR assignment including the stereospecific assignment of Aib residues methyl groups. The observed pattern of the structurally important secondary chemical shifts of 1H(alpha), 13C=O and 13C(alpha) agrees well with the previously determined structure of zervamicin IIB in methanol solution.

Legend

Protein

Chemical

Disease

Primary Citation of related structures