1R1K image
Deposition Date 2003-09-24
Release Date 2003-11-18
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1R1K
Title:
Crystal structure of the ligand-binding domains of the heterodimer EcR/USP bound to ponasterone A
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.30
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ULTRASPIRACLE PROTEIN
Chain IDs:B (auth: A)
Chain Length:263
Number of Molecules:1
Biological Source:Heliothis virescens
Polymer Type:polypeptide(L)
Molecule:Ecdysone receptor
Gene (Uniprot):EcR
Chain IDs:A (auth: D)
Chain Length:266
Number of Molecules:1
Biological Source:Heliothis virescens
Primary Citation
Structural adaptability in the ligand-binding pocket of the ecdysone hormone receptor.
Nature 426 91 96 (2003)
PMID: 14595375 DOI: 10.1038/nature02112

Abstact

The ecdysteroid hormones coordinate the major stages of insect development, notably moulting and metamorphosis, by binding to the ecdysone receptor (EcR); a ligand-inducible nuclear transcription factor. To bind either ligand or DNA, EcR must form a heterodimer with ultraspiracle (USP), the homologue of retinoid-X receptor. Here we report the crystal structures of the ligand-binding domains of the moth Heliothis virescens EcR-USP heterodimer in complex with the ecdysteroid ponasterone A and with a non-steroidal, lepidopteran-specific agonist BYI06830 used in agrochemical pest control. The two structures of EcR-USP emphasize the universality of heterodimerization as a general mechanism common to both vertebrates and invertebrates. Comparison of the EcR structures in complex with steroidal and non-steroidal ligands reveals radically different and only partially overlapping ligand-binding pockets that could not be predicted by molecular modelling and docking studies. These findings offer new perspectives for the design of insect-specific, environmentally safe insecticides. The concept of a ligand-dependent binding pocket in EcR provides an insight into the moulding of nuclear receptors to their ligand, and has potential applications for human nuclear receptors.

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