ISDA

Deposition Date 1990-05-04

Release Date 1991-10-15

Last Version Date 2024-05-22

Entry Detail

PDB ID:

1R09

Keywords:

VIRUS

Title:

HUMAN RHINOVIRUS 14 COMPLEXED WITH ANTIVIRAL COMPOUND R 61837

Biological Source:

Source Organism:

Human rhinovirus 14 (Taxon ID: 12131)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.90 Å

Space Group:

P 21 3

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
Chain IDs:A (auth: 1)
Chain Length:289
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)
Chain IDs:B (auth: 2)
Chain Length:262
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)
Chain IDs:C (auth: 3)
Chain Length:236
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)
Chain IDs:D (auth: 4)
Chain Length:68
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Ligand Molecules

DMS

JEN

Primary Citation

Human rhinovirus 14 complexed with antiviral compound R 61837.

Chapman, M.S, Minor, I, Rossmann, M.G, Diana, G.D, Andries, K, Arnold, E, Rossman, M.G, Badger, J, Minor, I, Oliveira, M.A, Smith, T.J, Rossmann, M.G, Badger, J, Krishnaswamy, S, Kremer, M.J, Oliveira, M.A, Rossmann, M.G, Heinz, B.A, Rueckert, R.R, Dutko, F.J, Mckinlay, M.A, Arnold, E, Rossmann, M.G, Badger, J, Minor, I, Kremer, M.J, Oliveira, M.A, Smith, T.J, Griffith, J.P, Guerin, D.M.A, Krishnaswamy, S, Luo, M, Rossmann, M.G, Mckinlay, M.A, Diana, G.D, Dutko, F.J, Fancher, M, Rueckert, R.R, Heinz, B.A, Arnold, E, Vriend, G, Luo, M, Griffith, J.P, Kamer, G, Erickson, J.W, Johnson, J.E, Rossmann, M.G, Arnold, E, Luo, M, Vriend, G, Rossmann, M.G, Palmenberg, A.C, Parks, G.D, Nicklin, M.J.H, Wimmer, E, Smith, T.J, Kremer, M.J, Luo, M, Vriend, G, Arnold, E, Kamer, G, Rossmann, M.G, Mckinlay, M.A, Diana, G.D, Otto, M.J, Rossmann, M.G, Arnold, E, Erickson, J.W, Frankenberger, E.A, Griffith, J.P, Hecht, H.-J, Johnson, J.E, Kamer, G, Luo, M, Vriend, G, Rossmann, M.G, Arnold, E, Erickson, J.W, Frankenberger, E.A, Griffith, J.P, Hecht, H.-J, Johnson, J.E, Kamer, G, Luo, M, Mosser, A.G, Rueckert, R.R, Sherry, B, Vriend, G, Arnold, E, Erickson, J.W, Fout, G.S, Frankenberger, E.A, Hecht, H.-J, Luo, M, Rossmann, M.G, Rueckert, R.R, Luo, M, Arnold, E, Erickson, J.W, Rossmann, M.G, Boege, U, Scraba, D.G, Erickson, J.W, Frankenberger, E.A, Rossmann, M.G, Fout, G.S, Medappa, K.C, Rueckert, R.R.Show

J.Mol.Biol. 217 455 463 (1991)

PMID: 1847215 DOI: 10.1016/0022-2836(91)90749-V

Abstact

The binding of the antirhinoviral agent R 61837 to human rhinovirus 14 has been examined by X-ray crystallographic methods. The compound R 61837 binds in the same pocket (underneath the canyon floor) as the "WIN" antirhinoviral agents. It does not penetrate as far into the pocket but causes similar conformational changes in the virus capsid. The movement of residues 1217 to 1221 of viral protein 1 (in the "FMDV loop") is more pronounced for R 61837 than for WIN compounds. Although both R 61837 and WIN antiviral agents partially fill the same hydrophobic pocket, atomic binding interactions differ, showing that considerable diversity in the nature of antiviral agents is possible.

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Primary Citation of related structures