ISDA

Deposition Date 2003-09-05

Release Date 2004-02-03

Last Version Date 2024-05-01

Entry Detail

PDB ID:

1QXB

Keywords:

DNA

Title:

NMR structure determination of the self complementary DNA Dodecamer CGCGAATT*CGCG in which a ribose is inserted between the 3'-OH of T8 and the 5'-phosphate group of C9

Biological Source:

Source Organism:

(Taxon ID: ) (Taxon ID: )

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Submitted:

Download Validation Report

Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:5'-d(CpGpCpGpApApTpTpCpGpCpG)-3'
Chain IDs:A, B
Chain Length:12
Number of Molecules:2
Biological Source:

Ligand Molecules

BDR

Primary Citation

Cleavage of DNA without loss of genetic information by incorporation of a disaccharide nucleoside.

Nauwelaerts, K, Vastmans, K, Froeyen, M, Kempeneers, V, Rozenski, J, Rosemeyer, H, Van Aerschot, A, Busson, R, Lacey, J.C, Efimtseva, E, Mikhailov, S, Lescrinier, E, Herdewijn, P.Show

Nucleic Acids Res. 31 6758 6769 (2003)

PMID: 14627809 DOI: 10.1093/nar/gkg911

Abstact

A ribose residue inserted between the 3'-OH of one nucleotide and the 5'-phosphate group of the next nucleotide, functions as a site-specific cleavage site within DNA. This extra ribose does not interrupt helix formation and it protects duplex DNA against cleavage by restriction enzymes. Cleavage can be obtained with periodate and all ribose fragments can be removed with sodium hydroxide. As a result of this, an intact natural oligodeoxynucleotide is obtained after ligation reaction, which means that site-specific cleavage and recovering of intact DNA occurs without loss of genetic information.

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Primary Citation of related structures