1QPW image
Deposition Date 1999-05-30
Release Date 1999-06-04
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1QPW
Title:
CRYSTAL STRUCTURE DETERMINATION OF PORCINE HEMOGLOBIN AT 1.8A RESOLUTION
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PORCINE HEMOGLOBIN (ALPHA SUBUNIT)
Gene (Uniprot):HBA
Chain IDs:A, C
Chain Length:141
Number of Molecules:2
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PORCINE HEMOGLOBIN (BETA SUBUNIT)
Gene (Uniprot):HBB
Chain IDs:B, D
Chain Length:146
Number of Molecules:2
Biological Source:Sus scrofa
Primary Citation
Structure determination of porcine haemoglobin.
Acta Crystallogr.,Sect.D 56 304 312 (2000)
PMID: 10713517 DOI: 10.1107/S0907444900000093

Abstact

To investigate a potential candidate material for making artificial red blood cells to supplement blood transfusion, the X-ray structure of porcine haemoglobin at 1.8 A resolution was determined as part of research towards synthesizing human blood. Porcine haemoglobin was crystallized by the vapor-diffusion method, producing crystals of dimensions 0.3-0.5 mm after successive seeding. The crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 68.10, b = 72.27, c = 114.85 A. The initial phase was determined by the molecular-replacement method, using human oxyhaemoglobin as a model. The final R factor was 21.1% for 36 820 reflections after validation of 574 water molecules. The r.m.s. deviations of bond lengths, angles, torsion angles and improper angles from their ideal values are 0.017 A, 3.0, 20.6 and 1.8 degrees, respectively. The average B factor is 33.63 A(2) for the haemoglobin molecule and 50.53 A(2) for the water molecules. The structure could be superimposed on a 2.8 A resolution structure with an r.m.s. difference of 0.59 A in main-chain atomic positions and 1. 27 A in side-chain atomic positions. Porcine and human haemoglobins are compared. A tentative model for artificial blood is proposed based on the complementarity relationship of the surface charges between haemoglobin and the surrounding cell membrane.

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