1QLF image
Entry Detail
PDB ID:
1QLF
Title:
MHC CLASS I H-2DB COMPLEXED WITH GLYCOPEPTIDE K3G
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
1999-08-30
Release Date:
1999-09-01
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MHC CLASS I H-2DB HEAVY CHAIN
Chain IDs:A
Chain Length:276
Number of Molecules:1
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Description:HUMAN BETA-2-MICROGLOBULIN
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Description:SYNTHETIC GLYCOPEPTIDE
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:SENDAI VIRUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SER C SER GLYCOSYLATION SITE
Primary Citation
Crystal Structures of Two H-2Db/Glycopeptide Complexes Suggest a Molecular Basis for Ctl Cross-Reactivity
Immunity 10 63 ? (1999)
PMID: 10023771 DOI: 10.1016/S1074-7613(00)80007-2

Abstact

Two synthetic O-GlcNAc-bearing peptides that elicit H-2Db-restricted glycopeptide-specific cytotoxic T cells (CTL) have been shown to display nonreciprocal patterns of cross-reactivity. Here, we present the crystal structures of the H-2Db glycopeptide complexes to 2.85 A resolution or better. In both cases, the glycan is solvent exposed and available for direct recognition by the T cell receptor (TCR). We have modeled the complex formed between the MHC-glycopeptide complexes and their respective TCRs, showing that a single saccharide residue can be accommodated in the standard TCR-MHC geometry. The models also reveal a possible molecular basis for the observed cross-reactivity patterns of the CTL clones, which appear to be influenced by the length of the CDR3 loop and the nature of the immunizing ligand.

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Primary Citation of related structures