1QLE image
Deposition Date 1999-08-30
Release Date 1999-12-02
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1QLE
Title:
CRYO-STRUCTURE OF THE PARACOCCUS DENITRIFICANS FOUR-SUBUNIT CYTOCHROME C OXIDASE IN THE COMPLETELY OXIDIZED STATE COMPLEXED WITH AN ANTIBODY FV FRAGMENT
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.30
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE POLYPEPTIDE I-BETA
Gene (Uniprot):ctaDII
Chain IDs:A
Chain Length:538
Number of Molecules:1
Biological Source:PARACOCCUS DENITRIFICANS
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE POLYPEPTIDE II
Gene (Uniprot):ctaC
Chain IDs:B
Chain Length:252
Number of Molecules:1
Biological Source:PARACOCCUS DENITRIFICANS
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE POLYPEPTIDE III
Gene (Uniprot):ctaE
Chain IDs:C
Chain Length:273
Number of Molecules:1
Biological Source:PARACOCCUS DENITRIFICANS
Polymer Type:polypeptide(L)
Molecule:CCYTOCHROME C OXIDASE
Gene (Uniprot):ctaH
Chain IDs:D
Chain Length:43
Number of Molecules:1
Biological Source:PARACOCCUS DENITRIFICANS
Polymer Type:polypeptide(L)
Molecule:HEAVY CHAIN ANTIBODY FV FRAGMENT
Chain IDs:E (auth: H)
Chain Length:119
Number of Molecules:1
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Molecule:LIGHT CHAIN ANTIBODY FV FRAGMENT
Chain IDs:F (auth: L)
Chain Length:108
Number of Molecules:1
Biological Source:MUS MUSCULUS
Primary Citation
The Cytochrome C Oxidase from Paracoccus Denitrificans Does not Change the Metal Center Ligation Upon Reduction
J.Biol.Chem. 274 33296 ? (1999)
PMID: 10559205 DOI: 10.1074/JBC.274.47.33296

Abstact

Cytochrome c oxidase catalyzes the reduction of oxygen to water. This process is accompanied by the vectorial transport of protons across the mitochondrial or bacterial membrane ("proton pumping"). The mechanism of proton pumping is still a matter of debate. Many proposed mechanisms require structural changes during the reaction cycle of cytochrome c oxidase. Therefore, the structure of the cytochrome c oxidase was determined in the completely oxidized and in the completely reduced states at a temperature of 100 K. No ligand exchanges or other major structural changes upon reduction of the cytochrome c oxidase from Paracoccus denitrificans were observed. The three histidine Cu(B) ligands are well defined in the oxidized and in the reduced states. These results are hardly compatible with the "histidine cycle" mechanisms formulated previously.

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Primary Citation of related structures