1QGC image
Deposition Date 1999-04-23
Release Date 2000-01-26
Last Version Date 2025-03-05
Entry Detail
PDB ID:
1QGC
Title:
STRUCTURE OF THE COMPLEX OF A FAB FRAGMENT OF A NEUTRALIZING ANTIBODY WITH FOOT AND MOUTH DISEASE VIRUS
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
30.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (VIRUS CAPSID PROTEIN VP1)
Chain IDs:A (auth: 1)
Chain Length:207
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type C
Polymer Type:polypeptide(L)
Molecule:PROTEIN (VIRUS CAPSID PROTEIN VP2)
Chain IDs:B (auth: 2)
Chain Length:218
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type C
Polymer Type:polypeptide(L)
Molecule:PROTEIN (VIRUS CAPSID PROTEIN VP3)
Chain IDs:C (auth: 3)
Chain Length:219
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type C
Polymer Type:polypeptide(L)
Molecule:PROTEIN (IMMUNOGLOBULIN LIGHT CHAIN)
Chain IDs:D (auth: 4)
Chain Length:218
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:PROTEIN (GH-LOOP FROM VIRUS CAPSID PROTEIN VP1)
Chain IDs:F (auth: 5)
Chain Length:24
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type C
Polymer Type:polypeptide(L)
Molecule:PROTEIN (IMMUNOGLOBULIN HEAVY CHAIN)
Chain IDs:E (auth: A)
Chain Length:220
Number of Molecules:1
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OCS D CYS CYSTEINESULFONIC ACID
Ligand Molecules
Primary Citation
Structure of the complex of an Fab fragment of a neutralizing antibody with foot-and-mouth disease virus: positioning of a highly mobile antigenic loop.
EMBO J. 16 1492 1500 (1997)
PMID: 9130694 DOI: 10.1093/emboj/16.7.1492

Abstact

Data from cryo-electron microscopy and X-ray crystallography have been combined to study the interactions of foot-and-mouth disease virus serotype C (FMDV-C) with a strongly neutralizing monoclonal antibody (mAb) SD6. The mAb SD6 binds to the long flexible GH-loop of viral protein 1 (VP1) which also binds to an integrin receptor. The structure of the virus-Fab complex was determined to 30 A resolution using cryo-electron microscopy and image analysis. The known structure of FMDV-C, and of the SD6 Fab co-crystallized with a synthetic peptide corresponding to the GH-loop of VP1, were fitted to the cryo-electron microscope density map. The SD6 Fab is seen to project almost radially from the viral surface in an orientation which is only compatible with monovalent binding of the mAb. Even taking into account the mAb hinge and elbow flexibility, it is not possible to model bivalent binding without severely distorting the Fabs. The bound GH-loop is essentially in what has previously been termed the 'up' position in the best fit Fab orientation. The SD6 Fab interacts almost exclusively with the GH-loop of VP1, making very few other contacts with the viral capsid. The position and orientation of the SD6 Fab bound to FMDV-C is in accord with previous immunogenic data.

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Protein

Chemical

Disease

Primary Citation of related structures