1QFB image
Entry Detail
PDB ID:
1QFB
Keywords:
Title:
THE CYCLIC PEPTIDE CONTRYPHAN-R FROM CONUS RADIATUS
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
1999-04-08
Release Date:
1999-09-29
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
LOWEST NOE & TOTAL ENERGY
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PROTEIN (CONTRYPHAN-R)
Chain IDs:A
Chain Length:9
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DTR A TRP D-TRYPTOPHAN
HYP A PRO 4-HYDROXYPROLINE
Ligand Molecules
Primary Citation
Solution structure of contryphan-R, a naturally occurring disulfide-bridged octapeptide containing D-tryptophan: comparison with protein loops.
Biochemistry 38 11553 11559 (1999)
PMID: 10471307 DOI: 10.1021/bi990685j

Abstact

Contryphan-R is a disulfide-constrained octapeptide containing a D-tryptophan that was isolated recently from venom of the cone shell Conus radiatus. The polypeptide is present in two forms in solution due to cis-trans isomerization at hydroxyproline 3. The solution structure of the major form of this unusual polypeptide, determined from NMR data, consists of a well-defined fold containing a non-hydrogen-bonded chain reversal from Gly1 to Glu5, which includes a cis-hydroxyproline and a D-Trp, and a type I beta-turn from Glu5 to Cys8. The presence of a putative salt bridge between the Glu5 carboxyl group and the N-terminal ammonium group is investigated by using various solvation models during energy minimization and is compared with the results of a pH titration. A comparison of the structure of contryphan-R with other cyclic peptide structures highlights some of the key structural determinants of these peptides and suggests that the contryphan-R fold could be exploited as a scaffold onto which unrelated protein binding surfaces could be grafted. Comparison with small disulfide-bridged loops in larger proteins shows that contryphan-R is similar to a commonly occurring loop structure found in proteins.

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Primary Citation of related structures