1QFA image
Deposition Date 1999-04-08
Release Date 2000-04-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1QFA
Title:
STRUCTURE OF A NEUROPEPTIDE Y Y2 AGONIST
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
20
Selection Criteria:
LOWEST STEREOCHEMICAL AND NOE ENERGIES
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (NEUROPEPTIDE Y)
Gene (Uniprot):NPY
Mutations:I28L, I31L
Chain IDs:A
Chain Length:15
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Helical structure and self-association in a 13 residue neuropeptide Y Y2 receptor agonist: relationship to biological activity.
Biochim.Biophys.Acta 1435 127 137 (1999)
PMID: 10561544 DOI: 10.1016/S0167-4838(99)00214-9

Abstact

The solution structure and self-association behaviour of a 13 residue peptide analogue of the C-terminal region of human neuropeptide Y (NPY) have been investigated. NMR analysis of Ac[Leu(28,31)]NPY(24-36), a potent Y2 receptor agonist, shows that it is unstructured in aqueous solution at 5-20 degrees C, but forms a well-defined helix (encompassing residues 25-35) in 40% trifluoroethanol/water at 20 degrees C. Sedimentation experiments show that, in contrast to many peptides in aqueous trifluoroethanol, Ac[Leu(28,31)]NPY(24-36) associates to form a trimer or, more likely, a tetramer in 40% trifluoroethanol, even though it is monomeric in water. This is consistent with the observation of inter-molecular nuclear Overhauser enhancements in trifluoroethanol. Possible models of the associated form that are consistent with the NMR data are described. The relevance of the helical structure observed in trifluoroethanol to the structure of this peptide bound to the NPY Y2 receptor is discussed.

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