1QD6 image
Deposition Date 1999-07-09
Release Date 1999-10-25
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1QD6
Title:
OUTER MEMBRANE PHOSPHOLIPASE A FROM ESCHERICHIA COLI
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (OUTER MEMBRANE PHOSPHOLIPASE (OMPLA))
Gene (Uniprot):pldA
Mutagens:ENZYME WITH N-TERMINAL EXTENSION ARIRAP AND COVALENTLY SULFONYLATED ON SERINE144
Chain IDs:C, D
Chain Length:240
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
Structural evidence for dimerization-regulated activation of an integral membrane phospholipase.
Nature 401 717 721 (1999)
PMID: 10537112 DOI: 10.1038/44890

Abstact

Dimerization is a biological regulatory mechanism employed by both soluble and membrane proteins. However, there are few structural data on the factors that govern dimerization of membrane proteins. Outer membrane phospholipase A (OMPLA) is an integral membrane enzyme which participates in secretion of colicins in Escherichia coli. In Campilobacter and Helicobacter pylori strains, OMPLA is implied in virulence. Its activity is regulated by reversible dimerization. Here we report X-ray structures of monomeric and dimeric OMPLA from E. coli. Dimer interactions occur almost exclusively in the apolar membrane-embedded parts, with two hydrogen bonds within the hydrophobic membrane area being key interactions. Dimerization results in functional oxyanion holes and substrate-binding pockets, which are absent in monomeric OMPLA. These results provide a detailed view of activation by dimerization of a membrane protein.

Legend

Protein

Chemical

Disease

Primary Citation of related structures