ISDA

Deposition Date 2003-07-29

Release Date 2004-04-06

Last Version Date 2023-08-16

Entry Detail

PDB ID:

1Q3A

Keywords:

HYDROLASE

Title:

Crystal structure of the catalytic domain of human matrix metalloproteinase 10

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.10 Å

R-Value Free:

0.29

R-Value Work:

0.27

R-Value Observed:

0.27

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Stromelysin-2
Gene (Uniprot):MMP10
Mutations:F170N
Chain IDs:A, B, C
Chain Length:165
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:P09238 Pfam ID:PF00413 EC:3.4.24.22

Ligand Molecules

NGH

Primary Citation

Crystal structure of the catalytic domain of human matrix metalloproteinase 10.

Bertini, I, Calderone, V, Fragai, M, Luchinat, C, Mangani, S, Terni, B, Natchus, M.G, Bookland, R.G, De, B, Almstead, N.G, Pikul, S, Janusz, M.J, Heitmeyer, S.A, Hookfin, E.B, Hsieh, L.C, Dowty, M.E, Dietsch, C.R, Patel, V.S, Garver, S.M, Gu, F, Pokross, M.E, Mieling, G.E, Baker, T.R, Foltz, D.J, Peng, S.X, Bornes, D.M, Strojnowski, M.J, Taiwo, Y.O, Almstead, N.G, Bradley, R.S, Pikul, S, De, B, Natchus, M.G, Taiwo, Y.O, Gu, F, Williams, L.E, Hynd, B.A, Janusz, M.J, Dunaway, C.M, Mieling, G.E.Show

J.Mol.Biol. 336 707 716 (2004)

PMID: 15095982 DOI: 10.1016/j.jmb.2003.12.033

Abstact

The catalytic domain of matrix metalloproteinase-10 (MMP-10) has been expressed in Escherichia coli and its crystal structure solved at 2.1 A resolution. The availability of this structure allowed us to critically examine the small differences existing between the catalytic domains of MMP-3 and MMP-10, which show the highest sequence identity among all MMPs. Furthermore, the binding mode of N-isobutyl-N-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid (NNGH), which is one of the most known commercial inhibitors of MMPs, is described for the first time.

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Primary Citation of related structures