1PX9 image
Deposition Date 2003-07-03
Release Date 2004-06-22
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1PX9
Keywords:
Title:
Solution structure of the native CnErg1 Ergtoxin, a highly specific inhibitor of HERG channel
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
10
Conformers Submitted:
1
Selection Criteria:
structures with acceptable covalent geometry, structures with favorable non-bond energy, structures with the least restraint violations, structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ergtoxin
Chain IDs:A
Chain Length:42
Number of Molecules:1
Biological Source:Centruroides noxius
Ligand Molecules
Primary Citation
Exploring structural features of the interaction between the scorpion toxinCnErg1 and ERG K+ channels.
Proteins 56 367 375 (2004)
PMID: 15211519 DOI: 10.1002/prot.20102

Abstact

The gamma-KTx-type scorpion toxins specific for K+ channels were found to interact with ERG channels on the turret region, while alpha-KTx3.2 Agitoxin-2 binds to the pore region of the Shaker K+ channel, and alpha-KTx5.3 BmP05 binds to the intermediate region of the small-conductance calcium-activated K-channel (SK(Ca)). In order to explore the critical residues for gamma-KTx binding, we determined the NMR structure of native gamma-KTx1.1 (CnErg1), a 42 amino acid residues scorpion toxin isolated from the venom of the Mexican scorpion Centruroïdes noxius Hoffmann, and we used computational evolutionary trace (ET) analysis to predict possible structural and functional features of interacting surfaces. The 1H-NMR three-dimensional solution structure of native ergtoxin (CnErg1) was solved using a total of 452 distance constraints, 13 3J(NH-Halpha) and 10 hydrogen bonds. The structure is characterized by 2 segments of alpha-helices and a triple-stranded antiparallel beta-sheet stabilized by 4 disulfide bridges. The ET and structural analysis provided indication of the presence of two important amino acid residue clusters, one hydrophobic and the other hydrophilic, that should be involved in the surface contact between the toxin and the channel. Some features of the proposed interacting surface are discussed.

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