1PKP image
Deposition Date 1993-08-30
Release Date 1994-01-31
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1PKP
Title:
THE STRUCTURE OF RIBOSOMAL PROTEIN S5 REVEALS SITES OF INTERACTION WITH 16S RRNA
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RIBOSOMAL PROTEIN S5
Gene (Uniprot):rpsE
Chain IDs:A
Chain Length:150
Number of Molecules:1
Biological Source:Geobacillus stearothermophilus
Ligand Molecules
Primary Citation
The structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA.
Nature 358 768 771 (1992)
PMID: 1508272 DOI: 10.1038/358768a0

Abstact

Understanding the process whereby the ribosome translates the genetic code into protein molecules will ultimately require high-resolution structural information, and we report here the first crystal structure of a protein from the small ribosomal subunit. This protein, S5, has a molecular mass of 17,500 and is highly conserved in all lifeforms. The molecule contains two distinct alpha/beta domains that have structural similarities to several other proteins that are components of ribonucleoprotein complexes. Mutations in S5 result in several phenotypes which suggest that S5 may have a role in translational fidelity and translocation. These include ribosome ambiguity or ram, reversion from streptomycin dependence and resistance to spectinomycin. Also, a cold-sensitive, spectinomycin-resistant mutant of S5 has been identified which is defective in initiation. Here we show that these mutations map to two distinct regions of the molecule which seem to be sites of interaction with ribosomal RNA. A structure/function analysis of the molecule reveals discrepancies with current models of the 30S subunit.

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Primary Citation of related structures