1PFZ image
Deposition Date 1998-07-07
Release Date 1999-01-13
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1PFZ
Title:
PROPLASMEPSIN II FROM PLASMODIUM FALCIPARUM
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROPLASMEPSIN II
Gene (Uniprot):PMII
Mutations:76 RESIDUES AT THE N-TERMINUS OF THE PROSEGMENT (1P - 76P) HAVE BEEN TRUNCATED, 3 RESIDUES (GLY-ARG-GLY) HAVE BEEN ADDED AT THE N-TERMINUS AS AN ARTIFACT OF THE EXPRESSION SYSTEM
Chain IDs:A, B, C, D
Chain Length:380
Number of Molecules:4
Biological Source:Plasmodium falciparum
Ligand Molecules
Primary Citation
Crystal structure of the novel aspartic proteinase zymogen proplasmepsin II from plasmodium falciparum.
Nat.Struct.Biol. 6 32 37 (1999)
PMID: 9886289 DOI: 10.1038/4905

Abstact

Proplasmepsin II is the zymogen of plasmepsin II, an aspartic proteinase used by Plasmodiumfalciparum to digest hemoglobin during the blood stage of malaria. A large shift between the N-domain and the central and C-domains of proplasmepsin II opens the active site cleft, preventing the formation of a functional aspartic proteinase active site. This mode of inhibition of catalytic activity has not been observed in any other aspartic proteinase zymogen. Instead of occluding a pre-formed active site, as in the gastric aspartic proteinase zymogens, the prosegment of proplasmepsin II interacts extensively with the C-domain and serves as a 'harness' to keep the domains apart. Disruption of key salt bridges at low pH may be important in activation.

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Disease

Primary Citation of related structures