1PD3 image
Deposition Date 2003-05-19
Release Date 2003-12-16
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1PD3
Title:
Influenza A NEP M1-binding domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nonstructural protein NS2
Gene (Uniprot):NS
Chain IDs:A, B
Chain Length:58
Number of Molecules:2
Biological Source:Influenza A virus
Ligand Molecules
Primary Citation
Crystal structure of the M1 protein-binding domain of the influenza A virus nuclear export protein (NEP/NS2).
Embo J. 22 4646 4655 (2003)
PMID: 12970177 DOI: 10.1093/emboj/cdg449

Abstact

During influenza virus infection, viral ribonucleoproteins (vRNPs) are replicated in the nucleus and must be exported to the cytoplasm before assembling into mature viral particles. Nuclear export is mediated by the cellular protein Crm1 and putatively by the viral protein NEP/NS2. Proteolytic cleavage of NEP defines an N-terminal domain which mediates RanGTP-dependent binding to Crm1 and a C-terminal domain which binds to the viral matrix protein M1. The 2.6 A crystal structure of the C-terminal domain reveals an amphipathic helical hairpin which dimerizes as a four-helix bundle. The NEP-M1 interaction involves two critical epitopes: an exposed tryptophan (Trp78) surrounded by a cluster of glutamate residues on NEP, and the basic nuclear localization signal (NLS) of M1. Implications for vRNP export are discussed.

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Primary Citation of related structures