1P4V image
Entry Detail
PDB ID:
1P4V
Keywords:
Title:
CRYSTAL STRUCTURE OF THE GLYCOSYLASPARAGINASE PRECURSOR D151N MUTANT WITH GLYCINE
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2003-04-24
Release Date:
2003-05-06
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase precursor
Mutations:D151N
Chain IDs:A, B (auth: C)
Chain Length:295
Number of Molecules:2
Biological Source:Elizabethkingia meningoseptica
Ligand Molecules
Primary Citation
A dual role for an aspartic acid in glycosylasparaginase autoproteolysis.
Structure 11 997 1003 (2003)
PMID: 12906830 DOI: 10.1016/S0969-2126(03)00150-3

Abstact

Glycosylasparaginase uses an autoproteolytic processing mechanism, through an N-O acyl shift, to generate a mature/active enzyme from a single-chain precursor. Structures of glycosylasparaginase precursors in complex with a glycine inhibitor have revealed the backbone in the immediate vicinity of the scissile peptide bond to be in a distorted trans conformation, which is believed to be the driving force for the N-O acyl shift to break the peptide bond. Here we report the effects of point mutation D151N. In addition to the loss of the base essential in autoproteolysis, this mutation also eradicates the backbone distortion near the scissile peptide bond. Binding of the glycine inhibitor to the autoproteolytic site of the D151N mutant does not restore the backbone distortion. Therefore, Asp151 plays a dual role, acting as the general base to activate the nucleophile and holding the distorted trans conformation that is critical for initiating an N-O acyl shift.

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Primary Citation of related structures