1OZY image
Deposition Date 2003-04-10
Release Date 2004-09-28
Last Version Date 2024-10-16
Entry Detail
PDB ID:
1OZY
Keywords:
Title:
Crystal Structure of Phospholipase A2 (MIPLA3) From Micropechis Ikaheka
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PHOSPHOLIPASE A2
Chain IDs:A, B
Chain Length:121
Number of Molecules:2
Biological Source:Micropechis ikaheka
Ligand Molecules
Primary Citation
Structure and function comparison of Micropechis ikaheka snake venom phospholipase A2 isoenzymes
FEBS J. 272 1211 1220 (2005)
PMID: 15720395 DOI: 10.1111/j.1742-4658.2005.04547.x

Abstact

Comparison of the crystal structures of three Micropechis ikaheka phospholipase A2 isoenzymes (MiPLA2, MiPLA3 and MiPLA4, which exhibit different levels of pharmacological effects) shows that their C-terminus (residues 110-124) is the most variable. M-Type receptor binding affinity of the isoenzymes has also been investigated and MiPLA4 binds to the rabbit M-type receptor with high affinity. Examination of surface charges of the isoenzymes reveals a trend of increase in positive charges with potency. The isoenzymes are shown to oligomerize in a concentration-dependent manner in a semi-denaturing gel. The C-termini of the medium (MiPLA4) and highly potent (MiPLA2) isoenzyme molecules cluster together, forming a highly exposed area. A BLAST search using the sequence of the most potent MiPLA2 results in high similarity to Staphylococcus aureus clotting factor A and cadherin 11. This might explain the myotoxicity, anticoagulant and hemoglobinuria effects of MiPLA2s.

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Primary Citation of related structures