1OYT image
Deposition Date 2003-04-07
Release Date 2003-06-24
Last Version Date 2024-04-03
Entry Detail
PDB ID:
1OYT
Keywords:
HYDROLASE/HYDROLASE INHIBITOR
Title:
COMPLEX OF RECOMBINANT HUMAN THROMBIN WITH A DESIGNED FLUORINATED INHIBITOR
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Hirudo medicinalis (Taxon ID: 6421)
Host Organism:
Cricetulus griseus
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.67 Å
R-Value Free:
0.20
R-Value Work:
0.17
Space Group:
C 1 2 1
1OYT validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:thrombin heavy chain
Gene (Uniprot):F2
Chain IDs:B (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hirudin IIB
Chain IDs:C (auth: I)
Chain Length:11
Number of Molecules:1
Biological Source:Hirudo medicinalis
UniProt ID:P28506
Protein Blast
Polymer Type:polypeptide(L)
Molecule:thrombin light chain
Gene (Uniprot):F2
Chain IDs:A (auth: L)
Chain Length:36
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Ligand Molecules
CA
FSN
NA
Peptide-like Molecules
PRD_000481
Primary Citation
A Fluorine Scan of Thrombin Inhibitors to Map the Fluorophilicity/Fluorophobicity of an Enzyme Active Site: Evidence for CF...C=O Interactions.
Angew.Chem.Int.Ed.Engl. 42 2507 2511 (2003)
PMID: 12800172 DOI: 10.1002/anie.200351268
Primary Citation of related structures
1OYT