1OS0 image
Deposition Date 2003-03-18
Release Date 2003-03-25
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1OS0
Title:
Thermolysin with an alpha-amino phosphinic inhibitor
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.17
R-Value Work:
0.14
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thermolysin
Gene (Uniprot):npr
Chain IDs:A
Chain Length:316
Number of Molecules:1
Biological Source:Bacillus thermoproteolyticus
Primary Citation
Interactions of a new alpha-aminophosphinic derivative inside the active site of TLN (thermolysin): a model for zinc-metalloendopeptidase inhibition.
Acta Crystallogr.,Sect.D 59 1200 1205 (2003)
PMID: 12832763 DOI: 10.1107/S0907444903010060

Abstact

A new alpha-aminophosphinic compound able to inhibit both zinc-containing exopeptidases and endopeptidases has been crystallized with TLN as a model in order to investigate the mode of zinc recognition by the phosphinic moiety and to evaluate the potential role of the free alpha-amino group in the formation of enzyme-inhibitor complexes. In addition to the main interactions between the backbone of the inhibitor and the enzyme active site, it is observed that the phosphinic group acts as a distorted bidentate ligand for the zinc ion, while the free alpha-amino function does not directly participate in interactions within the active site. Association of the present data and the K(i) values of various analogues of the inhibitor towards TLN and neprilysin suggests differences in the hydrophobicity of the S(1)-S(2) domains of the enzymes. This could be taken into account in the design of selective inhibitors.

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