1OOK image
Deposition Date 2003-03-03
Release Date 2003-07-22
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1OOK
Keywords:
Title:
Crystal Structure of the Complex of Platelet Receptor GPIb-alpha and Human alpha-Thrombin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Human Alpha Thrombin
Gene (Uniprot):F2
Chain IDs:A
Chain Length:36
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Human Alpha Thrombin
Gene (Uniprot):F2
Chain IDs:B
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Platelet glycoprotein Ib alpha chain precursor
Gene (Uniprot):GP1BA
Mutations:C65A
Chain IDs:D (auth: G)
Chain Length:290
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PHE-PRO-ARG-Chloromethylketone
Chain IDs:C (auth: P)
Chain Length:3
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
TYS D TYR O-SULFO-L-TYROSINE
Primary Citation
Modulation of alpha-thrombin function by distinct interactions with platelet glycoprotein Ibalpha
Science 301 218 221 (2003)
PMID: 12855810 DOI: 10.1126/science.1084183

Abstact

Thrombin bound to platelets contributes to stop bleeding and, in pathological conditions, may cause vascular thrombosis. We have determined the structure of platelet glycoprotein Ibalpha (GpIbalpha) bound to thrombin at 2.3 angstrom resolution and defined two sites in GpIbalpha that bind to exosite II and exosite I of two distinct alpha-thrombin molecules, respectively. GpIbalpha occupancy may be sequential, as the site binding to alpha-thrombin exosite I appears to be cryptic in the unoccupied receptor but exposed when a first thrombin molecule is bound through exosite II. These interactions may modulate alpha-thrombin function by mediating GpIbalpha clustering and cleavage of protease-activated receptors, which promote platelet activation, while limiting fibrinogen clotting through blockade of exosite I.

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Primary Citation of related structures