1OKH image
Deposition Date 2003-07-24
Release Date 2003-12-04
Last Version Date 2024-11-13
Entry Detail
PDB ID:
1OKH
Keywords:
Title:
Viscotoxin A3 from Viscum album L.
Biological Source:
Source Organism:
VISCUM ALBUM (Taxon ID: 3972)
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.25
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VISCOTOXIN A3
Gene (Uniprot):THI2.1
Chain IDs:A, B
Chain Length:46
Number of Molecules:2
Biological Source:VISCUM ALBUM
Primary Citation
Structure of Viscotoxin A3: Disulfide Location from Weak Sad Data
Acta Crystallogr.,Sect.D 59 2125 ? (2003)
PMID: 14646070 DOI: 10.1107/S0907444903018973

Abstact

The crystal structure of viscotoxin A3 (VT A3) extracted from European mistletoe (Viscum album L.) has been solved using the anomalous diffraction of the native S atoms measured in-house with Cu Kalpha radiation to a resolution of 2.2 A and truncated to 2.5 A. A 1.75 A resolution synchrotron data set was used for phase expansion and refinement. An innovation in the dual-space substructure-solution program SHELXD enabled the individual S atoms of the disulfide bonds to be located using the Cu Kalpha data; this resulted in a marked improvement in the phasing compared with the use of super-S atoms. The VT A3 monomer consists of 46 amino acids with three disulfide bridges and has an overall fold resembling the canonical architecture of the alpha- and beta-thionins, a capital letter L. The asymmetric unit consists of two monomers related by a local twofold axis and held together by hydrophobic interactions between the monomer units. One phosphate anion (confirmed by 31P-NMR and MS) is associated with each monomer.

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Primary Citation of related structures