1OIO image
Deposition Date 2003-06-22
Release Date 2003-08-15
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1OIO
Keywords:
Title:
GafD (F17c-type) Fimbrial adhesin from Escherichia coli
Biological Source:
Source Organism:
ESCHERICHIA COLI (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FIMBRIAL LECTIN
Gene (Uniprot):f17gG
Chain IDs:A, B
Chain Length:178
Number of Molecules:2
Biological Source:ESCHERICHIA COLI
Ligand Molecules
Primary Citation
The Structural Basis of Receptor-Binding by Escherichia Coli Associated with Diarrhea and Septicemia
J.Mol.Biol. 331 897 ? (2003)
PMID: 12909017 DOI: 10.1016/S0022-2836(03)00841-6

Abstact

GafD in Escherichia coli G (F17) fimbriae is associated with diarrheal disease, and the structure of the ligand-binding domain, GafD1-178, has been determined at 1.7A resolution in the presence of the receptor sugar N-acetyl-D-glucosamine. The overall fold is a beta-barrel jelly-roll fold. The ligand-binding site was identified and localized to the side of the molecule. Receptor binding is mediated by side-chain as well main-chain interactions. Ala43-Asn44, Ser116-Thr117 form the sugar acetamide specificity pocket, while Asp88 confers tight binding and Trp109 appears to position the ligand. There is a disulfide bond that rigidifies the acetamide specificity pocket. The three fimbrial lectins, GafD, FimH and PapG share similar beta-barrel folds but display different ligand-binding regions and disulfide-bond patterns. We suggest an evolutionary path for the evolution of the very diverse fimbrial lectins from a common ancestral fold.

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Protein

Chemical

Disease

Primary Citation of related structures
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