1OD5 image
Deposition Date 2003-02-13
Release Date 2003-06-02
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1OD5
Keywords:
Title:
Crystal structure of glycinin A3B4 subunit homohexamer
Biological Source:
Source Organism:
GLYCINE MAX (Taxon ID: 3847)
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GLYCININ
Chain IDs:A, B
Chain Length:492
Number of Molecules:2
Biological Source:GLYCINE MAX
Primary Citation
Crystal Structure of Soybean 11S Globulin: Glycinin A3B4 Homohexamer
Proc.Natl.Acad.Sci.USA 100 7395 ? (2003)
PMID: 12771376 DOI: 10.1073/PNAS.0832158100

Abstact

Most plant seeds contain 11S globulins as major storage proteins for their nutrition. Soybean glycinin belongs to the 11S globulin family and consists of five kinds of subunits. We determined the crystal structure of a homohexamer of the glycinin A3B4 subunit at 2.1-A resolution. The crystal structure shows that the hexamer has 32-point group symmetry formed by face-to-face stacking of two trimers. The interface buries the highly conserved interchain disulfide. Based on the structure, we propose that an ingenious face-to-face mechanism controls the hexamer formation of the 11S globulin by movement of a mobile disordered region to the side of the trimer after posttranslational processing. Electrostatic analysis of the faces suggests that the interchain disulfide-containing face has high positive potential at acidic pH, which induces dissociation of the hexamer into trimers that may be susceptible to proteinases after seed imbibition. This dissociation might result in the degradation and mobilization of 11S globulins as storage proteins in embryos during germination and seedling growth.

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