1O7T image
Entry Detail
PDB ID:
1O7T
Title:
Metal nanoclusters bound to the Ferric Binding Protein from Neisseria gonorrhoeae.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2002-11-12
Release Date:
2003-02-27
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.26
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 32
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:IRON BINDING PROTEIN
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:309
Number of Molecules:9
Biological Source:NEISSERIA GONORRHOEAE
Primary Citation
A novel protein-mineral interface.
Nat. Struct. Biol. 10 297 302 (2003)
PMID: 12598891 DOI: 10.1038/nsb903

Abstact

Transferrins transport Fe3+ and other metal ions in mononuclear-binding sites. We present the first evidence that a member of the transferrin superfamily is able to recognize multi-nuclear oxo-metal clusters, small mineral fragments that are the most abundant forms of many metals in the environment. We show that the ferric ion-binding protein from Neisseria gonorrhoeae (nFbp) readily binds clusters of Fe3+, Ti4+, Zr4+ or Hf4+ in solution. The 1.7 A resolution crystal structure of Hf-nFbp reveals three distinct types of clusters in an open, positively charged cleft between two hinged protein domains. A di-tyrosyl cluster nucleation motif (Tyr195-Tyr196) is situated at the bottom of this cleft and binds either a trinuclear oxo-Hf cluster, which is capped by phosphate, or a pentanuclear cluster, which in turn can be capped with phosphate. This first high-resolution structure of a protein-mineral interface suggests a novel metal-uptake mechanism and provides a model for protein-mediated mineralization/dissimilation, which plays a critical role in geochemical processes.

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