1O7D image
Deposition Date 2002-10-30
Release Date 2003-03-20
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1O7D
Keywords:
Title:
The structure of the bovine lysosomal a-mannosidase suggests a novel mechanism for low pH activation
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysosomal alpha-mannosidase
Gene (Uniprot):MAN2B1
Chain IDs:A
Chain Length:298
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Lysosomal alpha-mannosidase
Gene (Uniprot):MAN2B1
Chain IDs:B
Chain Length:84
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Lysosomal alpha-mannosidase
Gene (Uniprot):MAN2B1
Chain IDs:C
Chain Length:159
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Lysosomal alpha-mannosidase
Gene (Uniprot):MAN2B1
Chain IDs:D
Chain Length:282
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Lysosomal alpha-mannosidase
Gene (Uniprot):MAN2B1
Chain IDs:E
Chain Length:126
Number of Molecules:1
Biological Source:Bos taurus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
The Structure of Bovine Lysosomal Alpha-Mannosidase Suggests a Novel Mechanism for Low-Ph Activation
J.Mol.Biol. 327 631 ? (2003)
PMID: 12634058 DOI: 10.1016/S0022-2836(03)00172-4

Abstact

Lysosomal alpha-mannosidase (LAM: EC 3.2.1.24) belongs to the sequence-based glycoside hydrolase family 38 (GH38). Two other mammalian GH38 members, Golgi alpha-mannosidase II (GIIAM) and cytosolic alpha-mannosidase, are expressed in all tissues. In humans, cattle, cat and guinea pig, lack of lysosomal alpha-mannosidase activity causes the autosomal recessive disease alpha-mannosidosis. Here, we describe the three-dimensional structure of bovine lysosomal alpha-mannosidase (bLAM) at 2.7A resolution and confirm the solution state dimer by electron microscopy. We present the first structure of a mammalian GH38 enzyme that offers indications for the signal areas for mannose phosphorylation, suggests a previously undetected mechanism of low-pH activation and provides a template for further biochemical studies of the family 38 glycoside hydrolases as well as lysosomal transport. Furthermore, it provides a basis for understanding the human form of alpha-mannosidosis at the atomic level. The atomic coordinates and structure factors have been deposited in the Protein Data Bank (accession codes 1o7d and r1o7dsf).

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Primary Citation of related structures