1O6U image
Deposition Date 2002-10-16
Release Date 2003-10-17
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1O6U
Keywords:
Title:
The Crystal Structure of Human Supernatant Protein Factor
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SEC14-LIKE PROTEIN 2
Gene (Uniprot):SEC14L2
Chain IDs:A, B (auth: C), C (auth: E)
Chain Length:403
Number of Molecules:3
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Crystal Structure of Human Supernatant Protein Factor
Structure 10 1533 ? (2002)
PMID: 12429094 DOI: 10.1016/S0969-2126(02)00884-5

Abstact

Supernatant protein factor (SPF) promotes the epoxidation of squalene catalyzed by microsomes. Several studies suggest its in vivo role in the cholesterol biosynthetic pathway by a yet unknown mechanism. SPF belongs to a family of lipid binding proteins called CRAL_TRIO, which include yeast phosphatidylinositol transfer protein Sec14 and tocopherol transfer protein TTP. The crystal structure of human SPF at a resolution of 1.9 A reveals a two domain topology. The N-terminal 275 residues form a Sec14-like domain, while the C-terminal 115 residues consist of an eight-stranded jelly-roll barrel similar to that found in many viral protein structures. The ligand binding cavity has a peculiar horseshoe-like shape. Contrary to the Sec14 crystal structure, the lipid-exchange loop is in a closed conformation, suggesting a mechanism for lipid exchange.

Legend

Protein

Chemical

Disease

Primary Citation of related structures