1O1F image
Deposition Date 2002-11-15
Release Date 2002-12-04
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1O1F
Title:
MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
70.00 Å
Aggregation State:
TISSUE
Reconstruction Method:
TOMOGRAPHY
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SKELETAL MUSCLE ACTIN
Gene (Uniprot):ACTA1
Chain IDs:M (auth: 0), N (auth: 1), O (auth: 2), P (auth: 3), Q (auth: 4), R (auth: 5), S (auth: 6), T (auth: 7), U (auth: 8), V, W, X, Y, Z
Chain Length:375
Number of Molecules:14
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:SKELETAL MUSCLE MYOSIN II
Chain IDs:A, D, G, J
Chain Length:840
Number of Molecules:4
Biological Source:Gallus gallus
Polymer Type:polypeptide(L)
Molecule:SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN
Gene (Uniprot):MYL11
Chain IDs:B, E, H, K
Chain Length:145
Number of Molecules:4
Biological Source:Gallus gallus
Polymer Type:polypeptide(L)
Molecule:SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN
Chain IDs:C, F, I, L
Chain Length:147
Number of Molecules:4
Biological Source:Gallus gallus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLY A LYS N-DIMETHYL-LYSINE
Ligand Molecules
Primary Citation
Molecular Modeling of Averaged Rigor Crossbridges from Tomograms of Insect Flight Muscle
J.Struct.Biol. 138 92 104 (2002)
PMID: 12160705 DOI: 10.1016/S1047-8477(02)00013-8

Abstact

Electron tomography, correspondence analysis, molecular model building, and real-space refinement provide detailed 3-D structures for in situ myosin crossbridges in the nucleotide-free state (rigor), thought to represent the end of the power stroke. Unaveraged tomograms from a 25-nm longitudinal section of insect flight muscle preserved native structural variation. Recurring crossbridge motifs that repeat every 38.7 nm along the actin filament were extracted from the tomogram and classified by correspondence analysis into 25 class averages, which improved the signal to noise ratio. Models based on the atomic structures of actin and of myosin subfragment 1 were rebuilt to fit 11 class averages. A real-space refinement procedure was applied to quantitatively fit the reconstructions and to minimize steric clashes between domains introduced during the fitting. These combined procedures show that no single myosin head structure can fit all the in situ crossbridges. The validity of the approach is supported by agreement of these atomic models with fluorescent probe data from vertebrate muscle as well as with data from regulatory light chain crosslinking between heads of smooth muscle heavy meromyosin when bound to actin.

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Primary Citation of related structures