1O08 image
Entry Detail
PDB ID:
1O08
Keywords:
Title:
Structure of Pentavalent Phosphorous Intermediate of an Enzyme Catalyzed Phosphoryl transfer Reaction observed on cocrystallization with Glucose 1-phosphate
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2003-02-20
Release Date:
2003-03-18
Method Details:
Experimental Method:
Resolution:
1.20 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:beta-phosphoglucomutase
Chain IDs:A
Chain Length:221
Number of Molecules:1
Biological Source:Lactococcus lactis
Primary Citation
The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction.
Science 299 2067 2071 (2003)
PMID: 12637673 DOI: 10.1126/science.1082710

Abstact

Enzymes provide enormous rate enhancements, unmatched by any other type of catalyst. The stabilization of high-energy states along the reaction coordinate is the crux of the catalytic power of enzymes. We report the atomic-resolution structure of a high-energy reaction intermediate stabilized in the active site of an enzyme. Crystallization of phosphorylated beta-phosphoglucomutase in the presence of the Mg(II) cofactor and either of the substrates glucose 1-phosphate or glucose 6-phosphate produced crystals of the enzyme-Mg(II)-glucose 1,6-(bis)phosphate complex, which diffracted x-rays to 1.2 and 1.4 angstroms, respectively. The structure reveals a stabilized pentacovalent phosphorane formed in the phosphoryl transfer from the C(1)O of glucose 1,6-(bis)phosphate to the nucleophilic Asp8 carboxylate.

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