1NZL image
Deposition Date 2003-02-18
Release Date 2003-04-22
Last Version Date 2024-10-16
Entry Detail
PDB ID:
1NZL
Keywords:
Title:
Crystal Structure of Src SH2 domain bound to doubly phosphorylated peptide PQpYEpYIPI
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tyrosine-protein kinase transforming protein SRC
Gene (Uniprot):V-SRC
Chain IDs:A, B
Chain Length:103
Number of Molecules:2
Biological Source:Rous sarcoma virus (strain Schmidt-Ruppin)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PTR C TYR O-PHOSPHOTYROSINE
Primary Citation
Structural and Thermodynamic Basis for the Interaction of the Src SH2 domain with the Activated form of the PDGF beta-receptor
J.Mol.Biol. 328 655 668 (2003)
PMID: 12706723 DOI: 10.1016/S0022-2836(03)00344-9

Abstact

Recruitment of the Src kinase to the activated form of the platelet-derived growth factor (PDGF) receptor involves recognition of a unique sequence motif in the juxtamembrane region of the receptor by the Src homology 2 (SH2) domain of the enzyme. This motif contains two phosphotyrosine residues separated by one residue (sequence pYIpYV where pY indicates a phosphotyrosine). Here, we provide the thermodynamic and structural basis for the binding of this motif by the Src SH2 domain. We show that the second phosphorylation event increases the free energy window for specific interaction and that the physiological target is exquisitely designed for the task of recruiting specifically an SH2 domain which otherwise demonstrates very little intrinsic ability to discriminate sequences C-terminal to the first phosphorylation event. Surprisingly, we show that water plays a role in the recognition process.

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Primary Citation of related structures