1NU9 image
Deposition Date 2003-01-31
Release Date 2003-10-07
Last Version Date 2024-12-25
Entry Detail
PDB ID:
1NU9
Title:
Staphylocoagulase-Prethrombin-2 complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thrombin light and heavy chains
Gene (Uniprot):F2
Chain IDs:A, C (auth: D)
Chain Length:291
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Staphylocoagulase
Chain IDs:B (auth: C), D (auth: F)
Chain Length:281
Number of Molecules:2
Biological Source:Staphylococcus aureus
Peptide-like Molecules
PRD_000377
Primary Citation
Staphylocoagulase is a prototype for the mechanism of cofactor-induced zymogen activation
NATURE 425 535 539 (2003)
PMID: 14523451 DOI: 10.1038/nature01962

Abstact

Many bacterial pathogens secrete proteins that activate host trypsinogen-like enzyme precursors, most notably the proenzymes of the blood coagulation and fibrinolysis systems. Staphylococcus aureus, an important human pathogen implicated in sepsis and endocarditis, secretes the cofactor staphylocoagulase, which activates prothrombin, without the usual proteolytic cleavages, to directly initiate blood clotting. Here we present the 2.2 A crystal structures of human alpha-thrombin and prethrombin-2 bound to a fully active staphylocoagulase variant. The cofactor consists of two domains, each with three-helix bundles; this is a novel fold that is distinct from known serine proteinase activators, particularly the streptococcal plasminogen activator streptokinase. The staphylocoagulase fold is conserved in other bacterial plasma-protein-binding factors and extracellular-matrix-binding factors. Kinetic studies confirm the importance of isoleucine 1 and valine 2 at the amino terminus of staphylocoagulase for zymogen activation. In addition to making contacts with the 148 loop and (pro)exosite I of prethrombin-2, staphylocoagulase inserts its N-terminal peptide into the activation pocket of bound prethrombin-2, allosterically inducing functional catalytic machinery. These investigations demonstrate unambiguously the validity of the zymogen-activation mechanism known as 'molecular sexuality'.

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Primary Citation of related structures